Infrastructure overview
EurOPDX Data Portal infrastructure (EuroPDX IT research infrastructure) consists of following components:
- DataPortal / PDX search tool - the tool for searching and exploring PDX models, enabling user to export the selected models’ data into on-demand tools
- cBioPortal - tool for visualisation of various cancer genomics data sets; there is one common cBioPortal instance populated with all available data; cBioPortal instance can be also created upon user’s request and can be populated with user data
- DataHub - the main data repository
- LAS - Laboratory Assistant Suite - system for collecting PDX models data from laboratories
- Genome Cruzer (in preparation)
The overall structure of EDIReX IT infrastructure: