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Infrastructure overview

EurOPDX Data Portal infrastructure (EuroPDX IT research infrastructure) consists of following components:

  • DataPortal / PDX search tool - the tool for searching and exploring PDX models, enabling user to export the selected models’ data into on-demand tools
  • cBioPortal - tool for visualisation of various cancer genomics data sets; there is one common cBioPortal instance populated with all available data; cBioPortal instance can be also created upon user’s request and can be populated with user data
  • DataHub - the main data repository
  • LAS - Laboratory Assistant Suite - system for collecting PDX models data from laboratories
  • Genome Cruzer (in preparation)

The overall structure of EDIReX IT infrastructure:

Additional info