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EurOPDX Data Portal - Release Notes

Release 2.1


[ 29th Jul 2021]

  • Static cBioPortal upgrade to v3.6.7 - available at cbioportal.europdx.eu

  • Fixes in DataPortal on PDX Model Details page
    • Corrected displaying of user login
    • Details for some PDX models did not display - correcred
  • Explicit information about ‘Acceptable Use Policy and Conditions of Use’ before downloading data
    • Modal dialog at search page
    • Text information at PDX Model Details page
  • EDIReX Galaxy Pipelines with DataPortal Sandbox available at pipeline-prod.edirex.ics.muni.cz
    • Data provider can process acquired raw sequencing data via a bioinformatics pipeline implemented on Galaxy platform and validate the result dataset in a sandbox DataPortal and cBioPortal
    • For more information see EDIReX Galaxy Pipelines documentation

Release 2.0.2


[ 30th Mar 2021]

  • Merge of PDXFidner (commit from Jan 21st, 2021)
  • Search according to PdxModelID moved to ‘Filter By’ section
  • Data set from 9th Nov 2020

Release 2.0.1


[ 27th Sep 2020]

  • More samples per patient can be exported to cBioPortal
  • Searching according to PdxModelID - more ModelIDs / cancer types enabled
  • IRCC-GC - gistic values export to cBioPortal - fixed
  • Dosing study data are not visible in DataPortal model details - fixed

Release 2.0


[ 6th Aug 2020 ]

  • Merge of PDXFinder 6.0
  • New dataset from June 2020 available (995 PDX models, 8 research centres, 7 cancer diagnoses)
  • New filter “Transnational Access - TEST only”
  • Searching according to PdxModelID enabled

Release 1.1:


[ March 2020 ]

  • IRCC-GC molecular data are available
  • DataHub DB model revised / reworked - molecular data (CNAs, Mutations) are now loaded from N4J DB
  • Filter for already biobanked models implemented (see filter Access Modalities / Biobanked for Transnational access)
  • In section Search / Export - correction of statistics for molecular data per study